U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Metagenome-assembled genome: SRR1509794_bin.7_MetaBAT_v2.12.1_MAG

Identifiers
BioSample: SAMEA9694424; SRA: ERS7418670
Organism
uncultured bacterium
cellular organisms; Bacteria; environmental samples
Attributes
collection date2013-06-01
broad-scale environmental contextaquatic
local-scale environmental contextmarine
environmental mediumwater
geographic locationMexico
investigation typemetagenome-assembled genome
isolation sourcemarine metagenome
project nameMarine oxygen minimum zones (OMZs) are hotbeds of microbial diversity and biogeochemical cycling. The factors structuring OMZ microbial gene content and metabolic potential are complex and not well understood. This project sampled the major anoxic OMZ of the Eastern Tropical North Pacific to explore the hypothesis that trace metal availability shapes microbial gene content. Seawater for microbial metagenome was collected in June 2013 from multiple depths along the vertical OMZ redox gradient at two sites off Manzanillo, Mexico: Station 6 (nearshore; 18.9°N, 104.5°W; 30, 85, 100, 125, 300 m depths) and Station 10 (offshore; 18.8°N, 104.7°W; 30, 80, 125, 300 m depths). Community microbial DNA was extracted and shotgun sequenced using Illumina MiSeq technology (250X250 paired end) and analyzed relative to corresponding trace metal concentration measurements. De-multiplexed, un-merged sequence reads representing nine metagenomic datasets are deposited in the SRA in association with this accession number.
sample nameSRR1509794_bin.7_MetaBAT_v2.12.1_MAG
ENA first public2021-09-16
ENA last update2021-09-16
ENA-CHECKLISTERC000047
External IdSAMEA9694424
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2021-09-16T16:25:22Z
INSDC last update2021-09-16T16:25:22Z
INSDC statuspublic
Submitter IdSRR1509794_bin.7_MetaBAT_v2.12.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.11.1
binning parametersDefault
binning softwareMetaBAT v2.12.1
broker nameEMG broker account, EMBL-EBI
completeness score95.45
completeness softwareCheckM
contamination score3.41
geographic location (latitude)18.9
geographic location (longitude)-104.5
metagenomic sourcemarine metagenome
sample derived fromSAMN02905559
sequencing methodIllumina MiSeq
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR1509794 of study SRP044185.

BioProject
PRJEB37807 Uncultured novel prokaryotic genomes associated with with aquatic environments
Retrieve all samples from this project

Submission
EBI; 2021-09-25
Accession:
SAMEA9694424
ID:
21733342

BioProject Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center