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Metagenome-assembled genome: ERR2098388_bin.80_MetaBAT_v2.12.1_MAG

Identifiers
BioSample: SAMEA9694648; SRA: ERS7418894
Organism
uncultured Cellvibrionales bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Cellvibrionales; environmental samples
Attributes
collection date2017-05-30
broad-scale environmental contextaquatic
local-scale environmental contextmarine
environmental mediumwater
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourcemarine metagenome
project nameThis study includes experiments from the following five sequencing strategies: 1) Shotgun DNA sequencing; 2) Amplicon sequencing after 18S amplification by PCR using 1391F/EukB primer set. Library were constructed according to Illumina Library protocol without any sizing; 3) Amplicon sequencing after 16S amplification by PCR using 515F/926R primer set. Library were constructed according to Illumina Library protocol without any sizing; 4) Amplicon sequencing after 16S amplification by PCR using 515F/926R primer set. Library were constructed according to Illumina Library protocol with a sizing step selecting the 450-650 bp fragments; and 5) Amplicon sequencing after 16S amplification by PCR using 515F/926R primer set. Library were constructed according to Illumina Library protocol with a sizing step selecting the 650-850 bp fragments.
sample nameERR2098388_bin.80_MetaBAT_v2.12.1_MAG
ENA first public2021-09-16
ENA last update2021-09-16
ENA-CHECKLISTERC000047
External IdSAMEA9694648
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2021-09-16T16:25:22Z
INSDC last update2021-09-16T16:25:22Z
INSDC statuspublic
Submitter IdERR2098388_bin.80_MetaBAT_v2.12.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.11.0
binning parametersDefault
binning softwareMetaBAT v2.12.1
broker nameEMG broker account, EMBL-EBI
completeness score91.91
completeness softwareCheckM
contamination score1.67
geographic location (latitude)42.487
geographic location (longitude)3.169
metagenomic sourcemarine metagenome
sample derived fromSAMEA104212386
sequencing methodIllumina HiSeq 4000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2098388 of study ERP090011.

BioProject
PRJEB37807 Uncultured novel prokaryotic genomes associated with with aquatic environments
Retrieve all samples from this project

Submission
EBI; 2021-09-25
Accession:
SAMEA9694648
ID:
21733668

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