Metagenome-assembled genome: SRR5242444_bin.3_Meta... - BioSample

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Result Filters

Organism: uncultured Cellvibrionales bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Cellvibrionales; environmental samples

Attributes

collection date	2014-05-01
broad-scale environmental context	aquatic
local-scale environmental context	marine
environmental medium	water
geographic location	Pacific Ocean
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Investigating the composition of environmental DNA
sample name	SRR5242444_bin.3_MetaBAT_v2.12.1_MAG
ENA first public	2021-09-16
ENA last update	2021-09-16
ENA-CHECKLIST	ERC000047
External Id	SAMEA9694767
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2021-09-16T16:25:22Z
INSDC last update	2021-09-16T16:25:22Z
INSDC status	public
Submitter Id	SRR5242444_bin.3_MetaBAT_v2.12.1_MAG
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	metaspadesv3.11.1
binning parameters	Default
binning software	MetaBAT v2.12.1
broker name	EMG broker account, EMBL-EBI
completeness score	98.64
completeness software	CheckM
contamination score	1.23
geographic location (latitude)	37.3656
geographic location (longitude)	-137.7286
metagenomic source	marine metagenome
sample derived from	SAMN06314936
sequencing method	Illumina MiSeq
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5242444 of study SRP099177.