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Metagenome-assembled genome: ERR1163121_bin.2_MetaBAT_v2.12.1_MAG

Identifiers
BioSample: SAMEA9694994; SRA: ERS7419239
Organism
Corynebacterium tuberculostearicum
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium
Attributes
collection date2014-08-15
broad-scale environmental contextaquatic
local-scale environmental contextmarine
environmental mediumwater
geographic locationPacific Ocean
investigation typemetagenome-assembled genome
isolation sourcemarine metagenome
project nameThis projects explores the functional diversity and activity of rocky subseafloor microbial communities in hydrothermal vent systems. Samples were collected in 2014 from three low temperature diffuse fluid vents at Axial seamount, located in the northeast Pacific Ocean. We also collected a sample using a CTD within the Axial Caldera, at 1200m depth. Shotgun metagenomics and metatranscriptomics were performed on four diffuse vent samples. This study helps to determine the genetic potential and expression patterns of the largely uncharacterized subseafloor microbial community and shows how these patterns change across the complicated biogeochemical gradients of hydrothermal vent systems.
sample nameERR1163121_bin.2_MetaBAT_v2.12.1_MAG
ENA first public2021-09-16
ENA last update2021-09-16
ENA-CHECKLISTERC000047
External IdSAMEA9694994
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2021-09-16T16:25:22Z
INSDC last update2021-09-16T16:25:22Z
INSDC statuspublic
Submitter IdERR1163121_bin.2_MetaBAT_v2.12.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.11.1
binning parametersDefault
binning softwareMetaBAT v2.12.1
broker nameEMG broker account, EMBL-EBI
completeness score88.02
completeness softwareCheckM
contamination score0.81
geographic location (latitude)45.9332
geographic location (longitude)-130.0138
metagenomic sourcemarine metagenome
sample derived fromSAMEA3696449
sequencing methodIllumina HiSeq 1000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1163121 of study ERP013434.

BioProject
PRJEB37807 Uncultured novel prokaryotic genomes associated with with aquatic environments
Retrieve all samples from this project

Submission
EBI; 2021-09-25
Accession:
SAMEA9694994
ID:
21734166

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