Metagenome-assembled genome: ERR771004_bin.3_MetaB... - BioSample

Metagenome-assembled genome: ERR771004_bin.3_MetaBAT_v2.12.1_MAG

Organism: uncultured Gammaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; environmental samples

Attributes

collection date	2014-06-22
broad-scale environmental context	aquatic
local-scale environmental context	marine
environmental medium	water
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Sequencing of amplicon and metagenome samples from the main OSD event, representing joint effort of marine sampling stations around the world. The OSD campaign aims to analyze marine microbial community compositions and embedded functional traits on a single day, the solstice on 2014-06-21.
sample name	ERR771004_bin.3_MetaBAT_v2.12.1_MAG
ENA first public	2021-09-16
ENA last update	2021-09-16
ENA-CHECKLIST	ERC000047
External Id	SAMEA9695058
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2021-09-16T16:25:22Z
INSDC last update	2021-09-16T16:25:22Z
INSDC status	public
Submitter Id	ERR771004_bin.3_MetaBAT_v2.12.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes version 3.10.44
binning parameters	Default
binning software	MetaBAT v2.12.1
broker name	EMG broker account, EMBL-EBI
completeness score	84.86
completeness software	CheckM
contamination score	1.34
geographic location (latitude)	27.61578
geographic location (longitude)	-82.72587
metagenomic source	marine metagenome
sample derived from	SAMEA3275605
sequencing method	Illumina MiSeq
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR771004 of study ERP009703.

BioProject: PRJEB37807 Uncultured novel prokaryotic genomes associated with with aquatic environments
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