Metagenome-assembled genome: SRR5469033_bin.58_Met... - BioSample

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Result Filters

Organism: uncultured Gammaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; environmental samples

Attributes

collection date	2014-07-10
broad-scale environmental context	aquatic
local-scale environmental context	marine
environmental medium	water
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Metagenomic sequencing of methane-oxidizing mesocosms from the Gulf of Mexico and Hudson Canyon
sample name	SRR5469033_bin.58_MetaBAT_v2.12.1_MAG
ENA first public	2021-09-16
ENA last update	2021-09-16
ENA-CHECKLIST	ERC000047
External Id	SAMEA9695276
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2021-09-16T16:25:22Z
INSDC last update	2021-09-16T16:25:22Z
INSDC status	public
Submitter Id	SRR5469033_bin.58_MetaBAT_v2.12.1_MAG
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	metaspadesv3.11.1
binning parameters	Default
binning software	MetaBAT v2.12.1
broker name	EMG broker account, EMBL-EBI
completeness score	94.04
completeness software	CheckM
contamination score	1.99
geographic location (latitude)	39.55
geographic location (longitude)	-72.4
metagenomic source	marine metagenome
sample derived from	SAMN06266212
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5469033 of study SRP105005.