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Metagenome-assembled genome: SRR4023291_bin.12_MetaBAT_v2.12.1_MAG

Identifiers
BioSample: SAMEA9695406; SRA: ERS7419651
Organism
uncultured Pseudomonadota bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; environmental samples
Attributes
collection datenot provided
broad-scale environmental contextaquatic
local-scale environmental contextmarine
environmental mediumwater
geographic locationGreece
investigation typemetagenome-assembled genome
isolation sourcemarine metagenome
project nameMarine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey mat metagenome
sample nameSRR4023291_bin.12_MetaBAT_v2.12.1_MAG
ENA first public2021-09-16
ENA last update2021-09-16
ENA-CHECKLISTERC000047
External IdSAMEA9695406
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2021-09-16T16:25:22Z
INSDC last update2021-09-16T16:25:22Z
INSDC statuspublic
Submitter IdSRR4023291_bin.12_MetaBAT_v2.12.1_MAG
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwaremetaspadesv3.11.1
binning parametersDefault
binning softwareMetaBAT v2.12.1
broker nameEMG broker account, EMBL-EBI
completeness score98.74
completeness softwareCheckM
contamination score0.84
geographic location (latitude)36.5
geographic location (longitude)25.45
metagenomic sourcemarine metagenome
sample derived fromSAMN05518724
sequencing methodIllumina Genome Analyzer IIx
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR4023291 of study SRP081476.

BioProject
PRJEB37807 Uncultured novel prokaryotic genomes associated with with aquatic environments
Retrieve all samples from this project

Submission
EBI; 2021-09-25
Accession:
SAMEA9695406
ID:
21734756

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