U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Uncultivated Syntrophaceae bacterium UBA3084 genome recovered from SRX559946

Identifiers
BioSample: SAMN06453900; Sample name: Syntrophaceae bacterium UBA3084; SRA: SRS2034335
Organism
Syntrophaceae bacterium UBA3084
cellular organisms; Bacteria; Pseudomonadati; Thermodesulfobacteriota; Syntrophia; Syntrophales; Syntrophaceae; unclassified Syntrophaceae
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationUSA: Coal Oil Point, Santa Barbara, California
isolateUBA3084
isolation sourceOil polluted marine water
metagenome sourcemarine metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX559946 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated84.17%
contamination_estimated1.94%
environmental_sampletrue
genome_coverage31.01
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the marine metagenome reads: SRR1313318.
Description

Uncultivated genome recovered from an assembly of the SRX559946 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06453900
ID:
6453900

BioProject SRA Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center