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Uncultivated Sphingomonas sp. UBA1000 genome recovered from SRX748871

Identifiers
BioSample: SAMN06457503; Sample name: Sphingomonas sp. UBA1000; SRA: SRS2036295
Organism
Sphingomonas sp. UBA1000
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas; unclassified Sphingomonas
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationCosta Rica:Cuenca Murcielago
isolateUBA1000
isolation sourceCuenca Murcielago travertine
metagenome sourceaquatic metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX748871 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated82.12%
contamination_estimated2.83%
environmental_sampletrue
genome_coverage18.97
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the aquatic metagenome reads: SRR1636511.
Description

Uncultivated genome recovered from an assembly of the SRX748871 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06457503
ID:
6457503

BioProject SRA Nucleotide

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