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Microbe sample from Stenotrophomonas sp.

Identifiers
BioSample: SAMN07665543; Sample name: MYb238; SRA: SRS2565379
Organism
Stenotrophomonas sp. MYb238
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Stenotrophomonas; unclassified Stenotrophomonas
Package
Microbe; version 1.0
Attributes
strainMYb238
hostCaenorhabditis elegans
geographic locationGermany: Kiel
sample typewhole organism
collection date2012
collected byCarola Petersen
host tissue sampledC. elegans from rotting apple
HinrichSchulenburg
WentaoYang
CarolaPetersen
Description

Here we present 81 newly assembled genomes of bacteria, which were isolated in close association with C. elegans. From these genomes, we reconstructed metabolic models for each organism and searched for metabolic pathways to infer the physiological capacity of the microbiota. In parallel, we screened carbon source use and studied bacterial growth to verify our predictions. Considering host-microbe interactions, we observed a group of isolates able to colonize and persist in C. elegans, and identified several organisms that could interact with C. elegans via cross-feeding, or provide protection against pathogens

BioProject
PRJNA400855 Bacteria
Retrieve all samples from this project

Submission
Zoological Institute, Kiel University, Wentao Yang; 2017-09-19
Accession:
SAMN07665543
ID:
7665543

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