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Uncultivated Shigella bacterium UBA8541 genome recovered from SRX388467

Identifiers
BioSample: SAMN08017816; Sample name: UBA8541; SRA: SRS2845632
Organism
Shigella sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; unclassified Shigella
Package
Microbe; version 1.0
Attributes
isolateUBA8541
isolation sourcefreshwater
collection datenot applicable
geographic locationnot applicable
sample typemetagenomic assembly
metagenome sourcefreshwater metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
genome_coverage12.57x
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
completeness_estimated94.82%
contamination_estimated0.56%
environmental_sampletrue
metagenomictrue
notefreshwater metagenome
valueThis BioSample is a metagenomic assembly obtained from the freshwater metagenome reads: SRR1044681.
Description

Uncultivated genome recovered from an assembly of the SRX388467 metagenome.

BioProject
PRJNA417962 metagenome-assembled genomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-11-13
Accession:
SAMN08017816
ID:
8017816

BioProject SRA Nucleotide

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