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Uncultivated Shigella bacterium UBA8149 genome recovered from SRX286069

Identifiers
BioSample: SAMN08018151; Sample name: UBA8149; SRA: SRS2845963
Organism
Shigella sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; unclassified Shigella
Package
Microbe; version 1.0
Attributes
isolateUBA8149
isolation sourcewastewater
collection datenot applicable
geographic locationnot applicable
sample typemetagenomic assembly
metagenome sourcewastewater metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
genome_coverage212.93x
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
completeness_estimated97.93%
contamination_estimated0.04%
environmental_sampletrue
metagenomictrue
notewastewater metagenome
valueThis BioSample is a metagenomic assembly obtained from the wastewater metagenome reads: SRR867163,SRR867159,SRR867192,SRR867167,SRR867157,SRR867164,SRR867155,SRR866802,SRR867184,SRR867165,SRR867196,SRR866838.
Description

Uncultivated genome recovered from an assembly of the SRX286069 metagenome.

BioProject
PRJNA417962 metagenome-assembled genomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-11-13
Accession:
SAMN08018151
ID:
8018151

BioProject Nucleotide

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