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Uncultivated Shigella bacterium UBA11988 genome recovered from SRX384328

Identifiers
BioSample: SAMN08019900; Sample name: UBA11988; SRA: SRS2847851
Organism
Shigella sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; unclassified Shigella
Package
Microbe; version 1.0
Attributes
isolateUBA11988
isolation sourcefreshwater
collection datenot applicable
geographic locationnot applicable
sample typemetagenomic assembly
metagenome sourcefreshwater metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
genome_coverage9.81x
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
completeness_estimated91.32%
contamination_estimated1.11%
environmental_sampletrue
metagenomictrue
notefreshwater metagenome
valueThis BioSample is a metagenomic assembly obtained from the freshwater metagenome reads: SRR1039491.
Description

Uncultivated genome recovered from an assembly of the SRX384328 metagenome.

BioProject
PRJNA417962 metagenome-assembled genomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-11-13
Accession:
SAMN08019900
ID:
8019900

BioProject SRA Nucleotide

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