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Uncultivated Shigella bacterium UBA8536 genome recovered from SRX388469

Identifiers
BioSample: SAMN08020265; Sample name: UBA8536; SRA: SRS2845471
Organism
Shigella sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; unclassified Shigella
Package
Microbe; version 1.0
Attributes
isolateUBA8536
isolation sourcefreshwater
collection datenot applicable
geographic locationnot applicable
sample typemetagenomic assembly
metagenome sourcefreshwater metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
genome_coverage52.82x
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
completeness_estimated97.80%
contamination_estimated0.07%
environmental_sampletrue
metagenomictrue
notefreshwater metagenome
valueThis BioSample is a metagenomic assembly obtained from the freshwater metagenome reads: SRR1044683.
Description

Uncultivated genome recovered from an assembly of the SRX388469 metagenome.

BioProject
PRJNA417962 metagenome-assembled genomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-11-13
Accession:
SAMN08020265
ID:
8020265

BioProject SRA Nucleotide

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