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Pathogen: environmental/food/other sample from Escherichia coli

Identifiers
BioSample: SAMN08963947; SRA: SRS3219493; CFSAN: CFSAN080097
Organism
Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Package
Pathogen: environmental/food/other; version 1.0
Attributes
isolation sourceuterine swab
Interagency Food Safety Analytics Collaboration (IFSAC) categoryveterinary clinical/research| companion animal
source typeanimal
collection date2017-10-12
strainECOL-17-VL-NY-GA-0027
isolate name aliasCFSAN080097
collected byUniversity of Georgia College of Veterinary Medicine Tifton Veterinary Diagnostic and Investigational Laboratory
latitude and longitudemissing
geographic locationUSA:GA
hostCanis lupus familiaris
project nameVet-LIRN
sequenced byWGS-NY
attribute_packageenvironmental/food/other
ontological termdog:FOODON_03414847, swab:NCIT_C17627
PublicAccessionCFSAN080097
ProjectAccessionPRJNA324565
Speciescoli
GenusEscherichia
BioProject
PRJNA324565 Escherichia coli
Retrieve all samples from this project

Submission
CFSAN; 2018-04-20
Antibiogram
AntibioticResistance phenotypeMeasurement signMeasurementMeasurement unitsLaboratory typing methodLaboratory typing platformVendorLaboratory typing method version or reagentTesting standard
cefpodoximenot defined<=1mg/LMICSensititreTrek96-Well PlateCLSI
ceftazidimenot defined<=4mg/LMICSensititreTrek96-Well PlateCLSI
enrofloxacinnot defined<=0.12mg/LMICSensititreTrek96-Well PlateCLSI
marbofloxacinnot defined<=0.12mg/LMICSensititreTrek96-Well PlateCLSI
piperacillin-tazobactamnot defined<=8/4mg/LMICSensititreTrek96-Well PlateCLSI
pradofloxacinnot defined<=0.25mg/LMICSensititreTrek96-Well PlateCLSI
amikacinnot defined<=4mg/LMICSensititreTrek96-Well PlateCLSI
cefazolinnot defined<=1mg/LMICSensititreTrek96-Well PlateCLSI
imipenemnot defined<=1mg/LMICSensititreTrek96-Well PlateCLSI
orbifloxacinnot defined<=1mg/LMICSensititreTrek96-Well PlateCLSI
tetracyclinenot defined<=4mg/LMICSensititreTrek96-Well PlateCLSI
trimethoprim-sulfamethoxazolenot defined<=0.5/9.5mg/LMICSensititreTrek96-Well PlateCLSI
cephalexinnot defined==4mg/LMICSensititreTrek96-Well PlateCLSI
cefovecinnot defined==0.5mg/LMICSensititreTrek96-Well PlateCLSI
doxycyclinenot defined==2mg/LMICSensititreTrek96-Well PlateCLSI
amoxicillin-clavulanic acidnot defined==4/2mg/LMICSensititreTrek96-Well PlateCLSI
ampicillinnot defined==2mg/LMICSensititreTrek96-Well PlateCLSI
chloramphenicolnot defined==8mg/LMICSensititreTrek96-Well PlateCLSI
gentamicinnot defined==4mg/LMICSensititreTrek96-Well PlateCLSI
Accession:
SAMN08963947
ID:
8963947

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