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Pathogen: environmental/food/other sample from Escherichia coli

Identifiers: BioSample: SAMN12716813; SRA: SRS5362992; CFSAN: CFSAN098526

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Package: Pathogen: environmental/food/other; version 1.0

Attributes

isolation source	urine swab
Interagency Food Safety Analytics Collaboration (IFSAC) category	veterinary clinical/research\| companion animal
source type	animal
collection date	2019-01-28
strain	ECOL-19-VL-NY-GA-0001
isolate name alias	CFSAN098526
collected by	University of Georgia College of Veterinary Medicine Tifton Veterinary Diagnostic and Investigational Laboratory
latitude and longitude	missing
geographic location	USA:GA
host	Canis lupus familiaris
project name	Vet-LIRN
sequenced by	WGS-NY
attribute_package	environmental/food/other
ontological term	canis lupus familiaris:NCBITAXON_9615, swab:NCIT_C17627, urine:UBERON_0001088
PublicAccession	CFSAN098526
ProjectAccession	PRJNA324565
Species	coli
Genus	Escherichia

BioProject: PRJNA324565 Escherichia coli
Retrieve all samples from this project

Submission: CFSAN; 2019-09-09

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Laboratory typing platform	Vendor	Laboratory typing method version or reagent	Testing standard
amikacin	not defined	<=	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cefpodoxime	not defined	<=	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
ceftazidime	not defined	<=	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
enrofloxacin	not defined	<=	0.12	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
imipenem	not defined	<=	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
marbofloxacin	not defined	<=	0.12	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
orbifloxacin	not defined	<=	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
piperacillin-tazobactam	not defined	<=	8/4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
pradofloxacin	not defined	<=	0.25	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
tetracycline	not defined	<=	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
trimethoprim-sulfamethoxazole	not defined	<=	0.5/9.5	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
amoxicillin-clavulanic acid	not defined	==	8/4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
ampicillin	not defined	==	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cefazolin	not defined	==	2	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cefovecin	not defined	==	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
chloramphenicol	not defined	==	8	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
doxycycline	not defined	==	2	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
gentamicin	not defined	==	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cephalexin	not defined	==	16	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI

Accession:: SAMN12716813
ID:: 12716813

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