Pathogen: environmental/food/other sample from Esc... - BioSample

Pathogen: environmental/food/other sample from Escherichia coli

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Attributes

strain	ECOL-19-VL-LA-KY-0016
collected by	Murray State University Breathitt Veterinary Center
collection date	2019-04-26
geographic location	USA:KY
isolate name alias	CFSAN103065
latitude and longitude	missing
isolation source	Anal gland
Interagency Food Safety Analytics Collaboration (IFSAC) category	veterinary clinical/research\| companion animal
source type	animal
host	Canis lupus familiaris
intended consumer	not applicable
project name	Vet-LIRN
purpose of sampling	Monitoring
sequenced by	Louisiana Animal Disease Diagnostic Laboratory - Louisiana State University
PublicAccession	CFSAN103065
ProjectAccession	PRJNA324573
Species	coli
Genus	Escherichia
ontological term	anal:CURATION_0000507\| canis lupus familiaris:NCBITAXON_9615\| gland:UBERON_0002530
attribute_package	environmental/food/other

BioProject: PRJNA324573 Escherichia coli
Retrieve all samples from this project

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Laboratory typing platform	Vendor	Laboratory typing method version or reagent	Testing standard
amikacin	not defined	<=	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cefazolin	not defined	<=	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cefpodoxime	not defined	<=	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
ceftazidime	not defined	<=	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
enrofloxacin	not defined	<=	0.12	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
imipenem	not defined	<=	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
marbofloxacin	not defined	<=	0.12	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
orbifloxacin	not defined	<=	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
piperacillin-tazobactam	not defined	<=	8/4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
pradofloxacin	not defined	<=	0.25	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
tetracycline	not defined	<=	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
trimethoprim-sulfamethoxazole	not defined	<=	0.5/9.5	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
amoxicillin-clavulanic acid	not defined	==	4/2	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
ampicillin	not defined	==	2	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cephalexin	not defined	==	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cefovecin	not defined	==	0.5	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
chloramphenicol	not defined	==	8	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
doxycycline	not defined	==	2	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
gentamicin	not defined	==	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI