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Pathogen: environmental/food/other sample from Escherichia coli

Identifiers: BioSample: SAMN13981358; Sample name: ECOL-19-VL-LA-PA-Ryan-0028; SRA: SRS6142195

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Package: Pathogen: environmental/food/other; version 1.0

Attributes

strain	ECOL-19-VL-LA-PA-Ryan-0028
collected by	University of Pennsylvania School of Veterinary Medicine Ryan Veterinary Hospital
collection date	2019-07-03
geographic location	USA:PA
isolation source	urine
latitude and longitude	Not collected
host	Canis lupus familiaris
intended consumer	not applicable
project name	Vet-LIRN
purpose of sampling	Monitoring
sequenced by	Louisiana Animal Disease Diagnostic Laboratory - Louisiana State University
source type	animal

BioProject: PRJNA324573 Escherichia coli
Retrieve all samples from this project

Submission: Louisiana State University, Laura Peak; 2020-02-04

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Laboratory typing platform	Vendor	Laboratory typing method version or reagent	Testing standard
amikacin	not defined	<=	2	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
gentamicin	not defined	<=	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
imipenem	not defined	<=	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
nitrofurantoin	not defined	<=	16	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
amoxicillin-clavulanic acid	not defined	>=	32/16	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
ampicillin	not defined	>=	32	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cephalexin	not defined	>=	64	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cefovecin	not defined	>=	8	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cefpodoxime	not defined	>=	8	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
ceftiofur	not defined	>=	8	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
chloramphenicol	not defined	>=	64	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
enrofloxacin	not defined	>=	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
marbofloxacin	not defined	>=	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI

Accession:: SAMN13981358
ID:: 13981358

BioProject SRA Nucleotide

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