Pathogen: environmental/food/other sample from Esc... - BioSample - NCBI

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Pathogen: environmental/food/other sample from Escherichia coli

Identifiers: BioSample: SAMN14009997; SRA: SRS6109092; CFSAN: CFSAN104250

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Package: Pathogen: environmental/food/other; version 1.0

Attributes

strain	ECOL-19-VL-OH-IN-0072
collected by	Indiana Animal Disease Diagnostic Laboratory at Purdue University
collection date	2019-06-10
geographic location	USA: IN
isolate name alias	CFSAN104250
latitude and longitude	Not Provided
isolation source	surgical site
Interagency Food Safety Analytics Collaboration (IFSAC) category	veterinary clinical/research\| companion animal
source type	animal
host	Canis lupus familiaris
project name	Vet-LIRN
sequenced by	Ohio Department of Agriculture\|Animal Disease Diagnostic Laboratory
PublicAccession	CFSAN104250
ProjectAccession	PRJNA318589
Species	coli
Genus	Escherichia
ontological term	canis lupus familiaris:NCBITAXON_9615\| incision site:CURATION_0000472
attribute_package	environmental/food/other

Links

BioProject: PRJNA318589 Escherichia coli
Retrieve all samples from this project

Submission: CFSAN; 2020-02-05

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Laboratory typing platform	Vendor	Laboratory typing method version or reagent	Testing standard
enrofloxacin	not defined	<=	0.12	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
imipenem	not defined	<=	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
marbofloxacin	not defined	<=	0.12	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
orbifloxacin	not defined	<=	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
pradofloxacin	not defined	<=	0.25	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
trimethoprim-sulfamethoxazole	not defined	<=	0.5/9.5	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
amikacin	not defined	==	8	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
chloramphenicol	not defined	==	16	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
doxycycline	not defined	==	8	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
gentamicin	not defined	==	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
tetracycline	not defined	==	8	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
amoxicillin-clavulanic acid	not defined	>	8/4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
ampicillin	not defined	>	8	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cephalexin	not defined	>	16	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cefazolin	not defined	>	32	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cefovecin	not defined	>	8	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cefpodoxime	not defined	>	8	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
ceftazidime	not defined	>	16	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
piperacillin-tazobactam	not defined	>	64/4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI

Accession:: SAMN14009997
ID:: 14009997

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