Pathogen: environmental/food/other sample from Esc... - BioSample - NCBI

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Pathogen: environmental/food/other sample from Escherichia coli

Identifiers: BioSample: SAMN14544546; SRA: SRS6432178; CFSAN: CFSAN105108

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Package: Pathogen: environmental/food/other; version 1.0

Attributes

isolation source	urine
Interagency Food Safety Analytics Collaboration (IFSAC) category	veterinary clinical/research\| companion animal
source type	animal
strain	ECOL-19-VL-WA-NY-0043
collection date	2019-11-01
geographic location	USA:WA
isolate name alias	CFSAN105108
collected by	Cornell University, College of Veterinary Medicine
latitude and longitude	missing
host	Canis lupus familiaris
project name	Vet-LIRN-E.coli-WA
sequenced by	Washington State University Washington Animal Disease Diagnostic Laboratory
PublicAccession	CFSAN105108
attribute_package	environmental/food/other
Genus	Escherichia
Species	coli
ProjectAccession	PRJNA481346
ontological term	canis lupus familiaris:NCBITAXON_9615, urine:UBERON_0001088

BioProject: PRJNA481346 Escherichia coli
Retrieve all samples from this project

Submission: CFSAN; 2020-04-06

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Laboratory typing platform	Vendor	Laboratory typing method version or reagent	Testing standard
ampicillin	not defined	<=	2	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cephalexin	not defined	<=	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
ceftiofur	not defined	<=	0.5	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
tetracycline	not defined	<=	2	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
trimethoprim-sulfamethoxazole	not defined	<=	2/38	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
amoxicillin-clavulanic acid	not defined	==	4/2	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI

Accession:: SAMN14544546
ID:: 14544546

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Pathogen: environmental/food/other sample from Escherichia coli
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