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Pathogen: clinical or host-associated sample from Streptococcus pneumoniae

Identifiers: BioSample: SAMN14653009; Sample name: Streptococcus pneumoniae SCAID PHRX1-2019

Organism: Streptococcus pneumoniae
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus

Package: Pathogen: clinical or host-associated; version 1.0

Attributes

strain	SCAID PHRX1-2019
collected by	Scientific Center for anti-infectious Drugs, Laboratory of Microbiology
collection date	2019-07-24
geographic location	Kazakhstan: Almaty
host	Homo sapiens
host disease	bronchitis
isolation source	oropharyngeal swab of pharynx
latitude and longitude	43.23 N 76.88 E
host age	32
host disease outcome	Recovery
host disease stage	acute bronchitis
host sex	female
passage history	2

BioProject: PRJNA627194 Clinical isolates sequencing
Retrieve all samples from this project

Submission: Scientific Center for Anti-infectious Drugs (SCAID), Ilya Korotetskiy; 2020-04-21

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Laboratory typing platform	Vendor	Laboratory typing method version or reagent	Testing standard
amoxicillin	susceptible	==	20	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
ceftriaxone	intermediate	==	20	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
ciprofloxacin	susceptible	==	25	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
gentamicin	susceptible	==	21	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
clindamycin	susceptible	==	30	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
tobramycin	susceptible	==	15	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
cefepime	resistant	==	6	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
cefazolin	susceptible	==	27	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
oxacillin	resistant	==	6	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
levofloxacin	susceptible	==	20	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
meropenem	susceptible	==	29	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
erythromycin	susceptible	==	21	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
azithromycin	intermediate	==	15	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
imipenem	susceptible	==	30	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
streptomycin	resistant	==	10	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
carbenicillin	intermediate	==	21	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
ampicillin	intermediate	==	20	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
amikacin	resistant	==	6	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI

Accession:: SAMN14653009
ID:: 14653009

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