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Pathogen: clinical or host-associated sample from Escherichia coli

Identifiers: BioSample: SAMN14653305; Sample name: Escherichia coli SCAID URN1-2019

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Package: Pathogen: clinical or host-associated; version 1.0

Attributes

strain	SCAID URN1-2019
collected by	Scientific Center for anti-infectious Drugs, Laboratory of Microbiology
collection date	2019-03-08
geographic location	Kazakhstan: Almaty
host	Homo sapiens
host disease	Chronic cystitis
isolation source	urine
latitude and longitude	43.23 N 76.88 E
host age	71
host disease outcome	Chronic disease
host disease stage	Chronic cystitis
host sex	female
passage history	2

BioProject: PRJNA627194 Clinical isolates sequencing
Retrieve all samples from this project

Submission: Scientific Center for Anti-infectious Drugs (SCAID), Ilya Korotetskiy; 2020-04-21

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Laboratory typing platform	Vendor	Laboratory typing method version or reagent	Testing standard
amoxicillin	resistant	==	6	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
ceftriaxone	susceptible	==	30	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
ciprofloxacin	susceptible	==	35	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
gentamicin	susceptible	==	21	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
clindamycin	resistant	==	6	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
tobramycin	susceptible	==	20	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
cefepime	susceptible	==	25	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
cefazolin	susceptible	==	25	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
oxacillin	resistant	==	6	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
levofloxacin	susceptible	==	33	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
meropenem	susceptible	==	38	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
erythromycin	resistant	==	13	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
azithromycin	susceptible	==	25	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
imipenem	susceptible	==	33	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
streptomycin	resistant	==	6	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
carbenicillin	susceptible	==	21	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
ampicillin	resistant	==	6	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI
amikacin	susceptible	==	18	mm	disk diffusion	Scan 500	Interscience	Disk difussion method in Mueller-Hinton Agar	CLSI

Accession:: SAMN14653305
ID:: 14653305

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