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Pathogen: environmental/food/other sample from Escherichia coli

Identifiers: BioSample: SAMN16282954; Sample name: ECOL-20-VL-NY-FL-0005; SRA: SRS7441436

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Package: Pathogen: environmental/food/other; version 1.0

Attributes

isolation source	urine
collection date	2020-02-06
strain	ECOL-20-VL-NY-FL-0005
collected by	Florida Department of Agriculture and Consumer Services; Bronson Animal Disease Diagnostic Laboratory
latitude and longitude	missing
geographic location	USA:FL
isolate	missing
host	Canis lupus familiaris
project name	Vet-LIRN
sequenced by	WGS-NY
source type	animal

BioProject: PRJNA324565 Escherichia coli
Retrieve all samples from this project

Submission: NYVetLIRN; 2020-09-28

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Laboratory typing platform	Vendor	Laboratory typing method version or reagent	Testing standard
cefpodoxime	not defined	<=	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
ceftazidime	not defined	<=	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
enrofloxacin	not defined	<=	0.12	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
imipenem	not defined	<=	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
marbofloxacin	not defined	<=	0.12	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
orbifloxacin	not defined	<=	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
piperacillin-tazobactam	not defined	<=	8/4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
pradofloxacin	not defined	<=	0.25	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
tetracycline	not defined	<=	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
trimethoprim-sulfamethoxazole	not defined	<=	0.5/9.5	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
amoxicillin-clavulanic acid	not defined	==	4/2	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cephalexin	not defined	==	8	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cefazolin	not defined	==	2	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cefovecin	not defined	==	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
chloramphenicol	not defined	==	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
doxycycline	not defined	==	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
gentamicin	not defined	==	0.5	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
ampicillin	not defined	==	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
amikacin	not defined	<=	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI

Accession:: SAMN16282954
ID:: 16282954

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