Pathogen: clinical or host-associated sample from ... - BioSample

Pathogen: clinical or host-associated sample from Escherichia coli

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Attributes

collected by	Agriculture and Agri-Food Canada
collection date	2017-10-24
geographic location	Canada: Quebec
isolation source	feces
latitude and longitude	missing
host	Sus scrofa domesticus
host disease	missing
serotype	O8:H40
strain	R13-AF11-pFin-05

BioProject: PRJNA662792 Escherichia coli
Retrieve all samples from this project

Submission: Agriculture and Agri-Food Canada, Jean-Simon Brouard; 2020-09-30

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Laboratory typing platform	Testing standard
ampicillin	resistant	>	32	mg/L	MIC	Sensititer	CLSI
azithromycin	susceptible	==	4	mg/L	MIC	Sensititer	CLSI
cefoxitin	susceptible	==	4	mg/L	MIC	Sensititer	CLSI
ceftriaxone	susceptible	<	0.25	mg/L	MIC	Sensititer	CLSI
chloramphenicol	resistant	==	32	mg/L	MIC	Sensititer	CLSI
ciprofloxacin	susceptible	<	0.015	mg/L	MIC	Sensititer	CLSI
gentamicin	susceptible	==	0.5	mg/L	MIC	Sensititer	CLSI
meropenem	susceptible	<	0.06	mg/L	MIC	Sensititer	CLSI
nalidixic acid	susceptible	==	4	mg/L	MIC	Sensititer	CLSI
streptomycin	susceptible	==	16	mg/L	MIC	Sensititer	CLSI
sulfisoxazole	resistant	>	256	mg/L	MIC	Sensititer	CLSI
tetracycline	susceptible	<	4	mg/L	MIC	Sensititer	CLSI
amoxicillin-clavulanic acid	susceptible	==	8/1	mg/L	MIC	Sensititer	CLSI
piperacillin-tazobactam	susceptible	<	4/1	mg/L	MIC	Sensititer	CLSI
cefazolin	susceptible	<	8	mg/L	MIC	Sensititer	CLSI
cephalothin	resistant	>	16	mg/L	MIC	Sensititer	CLSI
cefotaxime	susceptible	<	0.25	mg/L	MIC	Sensititer	CLSI
cefpodoxime	susceptible	==	0.5	mg/L	MIC	Sensititer	CLSI
ceftazidime	susceptible	<	0.25	mg/L	MIC	Sensititer	CLSI
cefotaxime-clavulanic acid	not defined	<	0.12/1	mg/L	MIC	Sensititer	CLSI
ceftazidime-clavulanic acid	not defined	<	0.12/1	mg/L	MIC	Sensititer	CLSI
cefepime	susceptible	<	1	mg/L	MIC	Sensititer	CLSI
imipenem	susceptible	<	0.5	mg/L	MIC	Sensititer	CLSI
trimethoprim-sulfamethoxazole	resistant	>	4/1	mg/L	MIC	Sensititer	CLSI