Pathogen: environmental/food/other sample from Esc... - BioSample

Pathogen: environmental/food/other sample from Escherichia coli

Identifiers: BioSample: SAMN21038405; Sample name: ECOL-20-VL-NY-MS-0042; SRA: SRS9974514

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Package: Pathogen: environmental/food/other; version 1.0

Attributes

isolation source	urine
collection date	2020-11-04
strain	ECOL-20-VL-NY-MS-0042
host disease	Urinary tract infection
collected by	Mississippi State University Veterinary Research and Diagnostic Laboratory
latitude and longitude	missing
geographic location	USA:MS
host	Canis lupus familiaris
sequenced by	WGS-NY
source type	animal
project name	Vet-LIRN

BioProject: PRJNA324565 Escherichia coli
Retrieve all samples from this project

Submission: Vet-LIRN-NY; 2021-08-30

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Laboratory typing platform	Vendor	Laboratory typing method version or reagent	Testing standard
gentamicin	not defined	<=	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
imipenem	not defined	<=	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
marbofloxacin	not defined	<=	0.25	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
trimethoprim-sulfamethoxazole	not defined	<=	0.5/9.5	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
chloramphenicol	not defined	==	8	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
ticarcillin	not defined	==	64	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
oxacillin	not defined	>	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
amoxicillin-clavulanic acid	not defined	>	1/0.5	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
ampicillin	not defined	>	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cefazolin	not defined	>	8	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cefovecin	not defined	>	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cefoxitin	not defined	>	16	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cefpodoxime	not defined	>	16	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
ceftiofur	not defined	>	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cephalothin	not defined	>	8	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
clindamycin	not defined	>	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
erythromycin	not defined	>	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
penicillin	not defined	>	8	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
rifampin	not defined	>	2	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
doxycycline	not defined	<=	2	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
enrofloxacin	not defined	<=	0.25	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
amikacin	not defined	<=	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI

Accession:: SAMN21038405
ID:: 21038405

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Pathogen: environmental/food/other sample from Escherichia coli

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