Microbe sample from Escherichia coli - BioSample - NCBI

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Microbe sample from Escherichia coli

Identifiers: BioSample: SAMN38146106; Sample name: LACPHL-BACT-2023-00132; SRA: SRS19438198

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Package: Microbe; version 1.0

Attributes

strain	LACPHL-BACT-2023-00132
host	Homo sapiens
isolation source	gastrostomy tube drainage
collection date	2023-09-09
geographic location	USA: California, Los Angeles County
sample type	whole organism
MLST	ST410
PubMLST scheme	ecoli_achtman_4
AMRFinderPlus AMR core genes	glpT_E448K,parC_S80I,parE_S458A,pmrB_Y358N,ftsI_I336IKYRI,gyrA_D87N,gyrA_S83L,blaKPC-3,tet(A),blaCTX-M-15,mph(A),aac(3)-IIe,catB3,blaOXA-1,aac(6')-Ib-cr5
AMRFinderPlus AMR subclasses	AMIKACIN/KANAMYCIN/QUINOLONE/TOBRAMYCIN,AZTREONAM,BETA-LACTAM,CARBAPENEM,CEPHALOSPORIN,CHLORAMPHENICOL,COLISTIN,EFFLUX,FOSFOMYCIN,GENTAMICIN,MACROLIDE,QUINOLONE,TETRACYCLINE
AMRFinderPlus DB version	2023-04-17.1

BioProject: PRJNA1004324
Retrieve all samples from this project

Submission: LACPHL; 2023-11-07

Accession:: SAMN38146106
ID:: 38146106

BioProject SRA Nucleotide

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