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Microbe sample from Escherichia coli

Identifiers
BioSample: SAMN38146130; Sample name: LACPHL-BACT-2023-00156; SRA: SRS19438224
Organism
Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Package
Microbe; version 1.0
Attributes
strainLACPHL-BACT-2023-00156
hostHomo sapiens
isolation sourceurine
collection date2023-10-05
geographic locationUSA: California, Los Angeles County
sample typewhole organism
MLSTST410
PubMLST schemeecoli_achtman_4
AMRFinderPlus AMR core genesftsI_N337NYRIN,parC_S80I,parE_S458A,pmrB_Y358N,gyrA_D87N,gyrA_S83L,blaCMY-2,glpT_E448K,blaNDM-5,ble,sul1,aadA2,dfrA12,tet(A),aph(6)-Id,aph(3'')-Ib,sul2,qnrS1,floR,mph(A),tet(M),blaCTX-M-55,blaTEM,aph(3')-IIa,ble,rmtB1
AMRFinderPlus AMR subclassesAMINOGLYCOSIDE,AZTREONAM,BETA-LACTAM,BLEOMYCIN,CARBAPENEM,CEPHALOSPORIN,CHLORAMPHENICOL/FLORFENICOL,COLISTIN,EFFLUX,FOSFOMYCIN,KANAMYCIN,MACROLIDE,QUINOLONE,STREPTOMYCIN,SULFONAMIDE,TETRACYCLINE,TRIMETHOPRIM
AMRFinderPlus DB version2023-04-17.1
BioProject
PRJNA1004324
Retrieve all samples from this project

Submission
LACPHL; 2023-11-07
Accession:
SAMN38146130
ID:
38146130

BioProject SRA Nucleotide

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