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Microbe sample from Escherichia coli

Identifiers
BioSample: SAMN40022391; Sample name: LACPHL-BACT-2024-00014; SRA: SRS20516639
Organism
Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Package
Microbe; version 1.0
Attributes
strainLACPHL-BACT-2024-00014
hostHomo sapiens
isolation sourceblood
collection date2023-12-11
geographic locationUSA: California, Los Angeles County
sample typewhole organism
MLSTST361
PubMLST schemeecoli_achtman_4
AMRFinderPlus AMR core genesgyrA_D87N,gyrA_S83L,glpT_E448K,ftsI_N337NYRIN,parC_E84G,parC_S80I,tet(A),blaNDM-5,ble,sul1,aadA2,dfrA12,mph(A),blaCTX-M-15,catB3,blaOXA-1,aac(6')-Ib-cr5
AMRFinderPlus AMR subclassesAMIKACIN/KANAMYCIN/QUINOLONE/TOBRAMYCIN,AZTREONAM,BETA-LACTAM,BLEOMYCIN,CARBAPENEM,CEPHALOSPORIN,CHLORAMPHENICOL,EFFLUX,FOSFOMYCIN,MACROLIDE,QUINOLONE,STREPTOMYCIN,SULFONAMIDE,TETRACYCLINE,TRIMETHOPRIM
AMRFinderPlus DB version2023-04-17.1
BioProject
PRJNA1004324
Retrieve all samples from this project

Submission
LACPHL; 2024-02-21
Accession:
SAMN40022391
ID:
40022391

BioProject SRA Nucleotide

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