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Microbe sample from Escherichia coli

Identifiers
BioSample: SAMN40022397; Sample name: LACPHL-BACT-2024-00020; SRA: SRS20516645
Organism
Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Package
Microbe; version 1.0
Attributes
strainLACPHL-BACT-2024-00020
hostHomo sapiens
isolation sourceurine
collection date2024-01-20
geographic locationUSA: California, Los Angeles County
sample typewhole organism
MLSTST167
PubMLST schemeecoli_achtman_4
AMRFinderPlus AMR core genesgyrA_D87N,gyrA_S83L,parC_S80I,parE_S458A,ftsI_N337NYRIN,blaCTX-M-15,qnrS1,blaNDM-5,ble,erm(B),aph(6)-Id,aph(3'')-Ib,sul2,tet(A),aadA2,dfrA12,aadA5,dfrA17,blaTEM-1,sul1,aph(3')-Ia,mph(A)
AMRFinderPlus AMR subclassesAZITHROMYCIN/ERYTHROMYCIN/SPIRAMYCIN/TELITHROMYCIN,AZTREONAM/CEFIDEROCOL,BETA-LACTAM,BLEOMYCIN,CARBAPENEM,CEPHALOSPORIN,CLINDAMYCIN/ERYTHROMYCIN/STREPTOGRAMIN B,EFFLUX,KANAMYCIN,QUINOLONE,STREPTOMYCIN,SULFONAMIDE,TETRACYCLINE,TRIMETHOPRIM
AMRFinderPlus DB version2023-09-26.1
BioProject
PRJNA1004324
Retrieve all samples from this project

Submission
LACPHL; 2024-02-21
Accession:
SAMN40022397
ID:
40022397

BioProject SRA Nucleotide

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