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Microbe sample from Escherichia coli

Identifiers
BioSample: SAMN40022404; Sample name: LACPHL-BACT-2024-00027; SRA: SRS20516652
Organism
Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Package
Microbe; version 1.0
Attributes
strainLACPHL-BACT-2024-00027
hostHomo sapiens
isolation sourceurine
collection date2024-01-30
geographic locationUSA: California, Los Angeles County
sample typewhole organism
MLSTST410
PubMLST schemeecoli_achtman_4
AMRFinderPlus AMR core genesparC_S80I,parE_S458A,ftsI_N337NYRIN,glpT_E448K,pmrB_Y358N,gyrA_D87N,gyrA_S83L,blaNDM-5,ble,aac(3)-IId,blaCTX-M-15,mph(A),aadA5,dfrA17,tet(B),catB3,blaOXA-1,aac(6')-Ib-cr5,blaTEM-1,sul1
AMRFinderPlus AMR subclassesAMIKACIN/KANAMYCIN/QUINOLONE/TOBRAMYCIN,AZITHROMYCIN/ERYTHROMYCIN/SPIRAMYCIN/TELITHROMYCIN,AZTREONAM/CEFIDEROCOL,BETA-LACTAM,BLEOMYCIN,CARBAPENEM,CEPHALOSPORIN,CHLORAMPHENICOL,COLISTIN,EFFLUX,FOSFOMYCIN,GENTAMICIN,QUINOLONE,STREPTOMYCIN,SULFONAMIDE,TETRACYCLINE,TRIMETHOPRIM
AMRFinderPlus DB version2023-09-26.1
BioProject
PRJNA1004324
Retrieve all samples from this project

Submission
LACPHL; 2024-02-21
Accession:
SAMN40022404
ID:
40022404

BioProject SRA Nucleotide

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