LV_32_samp_4441_23. Sikli_2023

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Result Filters

Identifiers: BioSample: SAMN41711929; Sample name: Flavobacterium sp._LV_32_23. Sikli_2023

Organism: Flavobacterium sp.
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium; unclassified Flavobacterium

Attributes

isolate	samp_4441_concoct_708
isolation source	lake water
collection date	2023-05-31
depth	1m
derived from	SAMN41659701
sample type	metagenomic assembly
metagenome source	freshwater metagenome
broad-scale environmental context	large freshwater lake biome [ENVO:00000891]
local-scale environmental context	Lake [ENVO:00000020]
environmental medium	water [ENVO:00002006]
geographic location	Kenya:Lake Victoria
latitude and longitude	0.4294 S 34.364 E
collection method	Van dorn collection
conductivity	143.7(uS/cm)
dissolved oxygen	7.16mg/L
nitrate	4.505 (ug/L)
pH	8.6
sample collection device or method	Van dorn
sample storage temperature	-80 degree C
size fraction selected	0.22 micron
soluble reactive phosphorus	25.7(ug/L)
temperature	26.32degree C
total depth of water column	11.8m
total dissolved nitrogen	406(ug/L)
total nitrogen	816 (ug/L)
total phosphorus	93 (ug/L)
turbidity	27.9NTU
metagenomic	1
environmental-sample	1
geo_loc_me	Lake Victoria
Completeness(%)	84.34
Contamition (%)	17.29
Strain Heterogeneity (%)	72.04
Size (Mbp)	2.403444
No. Of Contigs	1305
GC_Content (%)	33.1
N50	1887
file	samp_4441_concoct_708