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1b98e73a-bd30-4e9f-89b7-3eee384ba34d-asg-MAGScoT_cleanbin_000056

Identifiers
BioSample: SAMEA114406770; SRA: ERS16395444
Organism
uncultured Sphaerochaeta sp.
cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Sphaerochaetaceae; Sphaerochaeta; environmental samples
Attributes
broad-scale environmental contextaquatic biome
collected byJOHANA ROTTEROVA
collection date2021-10-07
depth1899-12-30
environmental mediumciliate culture
geographic locationUSA
host life stagevegetative cell
hostMetopus strain FRESH26
host taxonomy ID2980496 (2980496)
identified byJOHANA ROTTEROVA
investigation typemetagenome-assembled genome
isolation sourceCiliate: Metopus strain FRESH26
tissueWHOLE ORGANISM
project nameASG
sample collection device or methodhand collected into a 50 ml tube
sample name1b98e73a-bd30-4e9f-89b7-3eee384ba34d
specimen voucherNOT PROVIDED
16S recoveredYes
16S recovery softwarePROKKA (version 1.14.5)
ENA-CHECKLISTERC000047
GALUniversity of British Columbia
GAL_sample_idNOT PROVIDED
INSDC center nameTree of Life Programme
MAG coverage softwareMinimap2 (version 2.24-r1122)
Submitter Id1b98e73a-bd30-4e9f-89b7-3eee384ba34d
assembly qualitySingle contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly softwaremetaMDBG
barcoding centerUNIVERSITY OF RHODE ISLAND
binning parameterscoverage; graph; hic-mapping
binning softwareMAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
collecting institutionUNIVERSITY OF RHODE ISLAND
completeness score98.8
completeness softwarecheckM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score2.27
culture_or_strain_idFRESH26 strain in culture collection of Roxanne Beinart, GSO, URI, RI, USA
geographic location (latitude)41.49
geographic location (longitude)-71.42
geographic location (region and locality)RHODE ISLAND | NARRAGANSETT | UNIVERSITY OF RHODE ISLAND
habitatsalt marsh sediment
identifier_affiliationUNIVERSITY OF RHODE ISLAND
local environmental contextmarine salt marsh biome
metagenomic sourceciliate metagenome
number of standard tRNAs extracted49
original collection date2019-08-22
original collection locationUSA | MASSACHUSETTS | FALMOUTH | FRESH RIVER
original geographic location (latitude)41.541917
original geographic location (longitude)-70.622194
sample derived fromSAMEA114406700
scientific_nameuncultured Sphaerochaeta sp.
sequencing methodPacbio Sequel II
specimen_idUOBC0000027
tRNA extraction softwarePROKKA (version 1.14.5)
taxonomic classificationGTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity markertaxonomic classification defined by topology and ANI
tolidpiMetSpea1.Sphaerochaeta_sp_2
BioProjects
PRJEB69131 piMetSpea1.Sphaerochaeta_sp_2
Retrieve all samples from this project

PRJEB69056 piMetSpea1.metagenome
Retrieve all samples from this project

Submission
EBI; 2023-09-22
Accession:
SAMEA114406770
ID:
37510314

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