U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

Updated reference genome sequence and annotation of Mycobacterium bovis AF2122/97

Identifiers
BioSample: SAMEA20450668; SRA: ERS1465382
Organism
Mycobacterium tuberculosis variant bovis AF2122/97
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; Mycobacterium tuberculosis variant bovis
Attributes
collection date1997
geographic locationUnited Kingdom
host health statediseased
hostBos taurus
isolateAF2122/97
isolation sourceMycobacterium bovis subsp. bovis strain AF2122/97. This strain is a fully virulent strain that was isolated in 1997 in the UK from a cow suffering necrotic lesions in lung and bronchomediastinal lymph nodes. The strain was also reported to infect and persist in badgers that are considered to be a significant source of bovine infection.
sample nameAF2122/97
ENA first public2016-12-06
ENA last update2016-12-06
ENA-CHECKLISTERC000028
External IdSAMEA20450668
INSDC center aliasSchool of Veterinary Medicine
INSDC center nameSchool of Veterinary Medicine
INSDC first public2016-12-06T17:02:11Z
INSDC last update2016-12-06T11:35:58Z
INSDC statuspublic
Submitter IdAF2122/97
Description

We report an update to the reference genome sequence of the bovine tuberculosis bacillus Mycobacterium bovis AF2122/97 generated using an integrative multi-‘omics approach. Updates include 42 new coding sequences, 14 modified annotations, 26 single nucleotide polymorphisms and disclosure that the RD900 locus, previously described as absent from the M. bovis AF2122/97 genome, is in fact present.

BioProject
PRJEB15187 Updating the Mycobacterium bovis AF2122/97 genome assembly
Retrieve all samples from this project

Submission
EBI; 2016-12-07
Accession:
SAMEA20450668
ID:
6117547

BioProject Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center