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Uncultivated Pantoea septica UBA1889 genome recovered from SRX822412

Identifiers
BioSample: SAMN06452247; Sample name: Pantoea septica UBA1889; SRA: SRS2038865
Organism
Pantoea septica
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationUSA:New York City
isolateUBA1889
isolation sourcemetal/plastic
metagenome sourceterrestrial metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX822412 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated89.62%
contamination_estimated0.46%
environmental_sampletrue
genome_coverage9.42
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the terrestrial metagenome reads: SRR1749029.
Description

Uncultivated genome recovered from an assembly of the SRX822412 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06452247
ID:
6452247

BioProject SRA Nucleotide

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