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Pathogen: clinical or host-associated sample from Clostridioides difficile

Identifiers
BioSample: SAMN08550463; Sample name: Cd88141
Organism
Clostridioides difficile
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Package
Pathogen: clinical or host-associated; version 1.0
Attributes
strainCd88141
genotypeST139
collected byBradley Gardiner
collection date2017
geographic locationUSA: MA, Boston, Tufts Medical Center
hostHomo sapiens
host diseaseHIV; end-stage renal disease due to HIV nephropathy developed peritoneal-dialysis associated peritonitis with Candida parapsilosis.
isolation sourceperitoneal cavity
latitude and longitude42.20 N 71.03 W
host age51
host descriptionmale
host disease outcomeThe patient ultimately responded to prolonged, targeted antimicrobial therapy informed by susceptibility testing
host disease stageThe patient had long-standing, well-controlled HIV infection and end-stage renal disease due to HIV nephropathy developed peritoneal-dialysis associated peritonitis with Candida parapsilosis
host sexmale
noteunique ribotype
BioProject
PRJNA434292 Clostridioides difficile
Retrieve all samples from this project

Submission
Montana State University, nicholas pinkham; 2018-02-15
Accession:
SAMN08550463
ID:
8550463

BioProject Nucleotide

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