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Uncultivated Shigella bacterium UBA12579 genome recovered from SRX212533

Identifiers
BioSample: SAMN08019891; Sample name: UBA12579; SRA: SRS2842970
Organism
Shigella sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; unclassified Shigella
Package
Microbe; version 1.0
Attributes
isolateUBA12579
isolation sourcemetagenome
collection datenot applicable
geographic locationnot applicable
sample typemetagenomic assembly
metagenome sourceEscherichia coli 20-62 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
genome_coverage104.21x
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
completeness_estimated99.70%
contamination_estimated0.04%
environmental_sampletrue
metagenomictrue
noteEscherichia coli 20-62 metagenome
valueThis BioSample is a metagenomic assembly obtained from the Escherichia coli 20-62 metagenome reads: SRR641355.
Description

Uncultivated genome recovered from an assembly of the SRX212533 metagenome.

BioProject
PRJNA417962 metagenome-assembled genomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-11-13
Accession:
SAMN08019891
ID:
8019891

BioProject SRA Nucleotide

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