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Pathogen: clinical or host-associated sample from Escherichia coli

Identifiers: BioSample: SAMN10620098; Sample name: URMC_20_E_Col

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Package: Pathogen: clinical or host-associated; version 1.0

Attributes

strain	URMC_20
collected by	Heba Mostafa
collection date	2017
geographic location	USA: Rochester, NY
host	Homo sapiens
host disease	urinary tract infection
isolation source	urine
latitude and longitude	43.1566 N 77.6088 W

BioProject: PRJNA510429 Escherichia coli
Retrieve all samples from this project

Submission: URMC, Heba Mostafa; 2018-12-20

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Laboratory typing platform	Vendor	Laboratory typing method version or reagent	Testing standard
ampicillin	resistant	>=	32	mg/L	MIC				CLSI
amikacin	susceptible	<=	2	mg/L	MIC				CLSI
aztreonam	resistant	==	16	mg/L	MIC				CLSI
ciprofloxacin	resistant	>=	4	mg/L	MIC				CLSI
ceftriaxone	resistant	>=	64	mg/L	MIC				CLSI
cefazolin	resistant	>=	64	mg/L	MIC				CLSI
ertapenem	susceptible	<=	0.5	mg/L	MIC				CLSI
nitrofurantoin	susceptible	<=	16	mg/L	MIC				CLSI
cefepime	susceptible	==	2	mg/L	MIC				CLSI
gentamicin	susceptible	<=	1	mg/L	MIC				CLSI
imipenem	susceptible	==	25	mm	disk diffusion				CLSI
levofloxacin	resistant	==	6	mm	disk diffusion				CLSI
meropenem	susceptible	<=	0.25	mg/L	MIC				CLSI
moxifloxacin	resistant	==	6	mm	disk diffusion				CLSI
tigecycline	susceptible	<=	0.5	mg/L	MIC				CLSI
tobramycin	susceptible	<=	1	mg/L	MIC				CLSI

Accession:: SAMN10620098
ID:: 10620098

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Pathogen: clinical or host-associated sample from Escherichia coli
Pathogen: clinical or host-associated sample from Escherichia coli

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