Pathogen: environmental/food/other sample from Esc... - BioSample

Pathogen: environmental/food/other sample from Escherichia coli

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Attributes

isolation source	Bladder mucosa
Interagency Food Safety Analytics Collaboration (IFSAC) category	veterinary clinical/research\| companion animal
source type	animal
collection date	2018-01-02
strain	ECOL-18-VL-LA-PA-Ryan-0006
isolate name alias	CFSAN083952
collected by	University of Pennsylvania School of Veterinary Medicine Ryan Veterinary Hospital
latitude and longitude	missing
geographic location	USA:PA
host	Canis lupus familiaris
intended consumer	not applicable
project name	Vet-LIRN
purpose of sampling	Monitoring
sequenced by	Louisiana Animal Disease Diagnostic Laboratory - Louisiana State University
attribute_package	environmental/food/other
ontological term	canis lupus familiaris:NCBITAXON_9615, mucosa of urinary bladder:UBERON_0001259
PublicAccession	CFSAN083952
ProjectAccession	PRJNA324573
Species	coli
Genus	Escherichia

BioProject: PRJNA324573 Escherichia coli
Retrieve all samples from this project

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Laboratory typing platform	Vendor	Laboratory typing method version or reagent	Testing standard
polymyxin B	not defined	<=	0.25	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
amikacin	not defined	<=	2	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
ceftiofur	not defined	<=	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
enrofloxacin	not defined	<=	0.12	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
gentamicin	not defined	<=	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
imipenem	not defined	<=	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
marbofloxacin	not defined	<=	0.5	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
nitrofurantoin	not defined	<=	16	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
piperacillin	not defined	<=	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
tetracycline	not defined	<=	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
tobramycin	not defined	<=	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
trimethoprim-sulfamethoxazole	not defined	<=	1/19	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
chloramphenicol	not defined	==	16	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
amoxicillin-clavulanic acid	not defined	==	4/2	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
ampicillin	not defined	==	8	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cephalexin	not defined	==	8	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cefovecin	not defined	==	2	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cefpodoxime	not defined	==	0.5	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI