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MAG Kiruna3_bin-4410 from assembly ERS4649296

Identifiers
BioSample: SAMEA6956530; SRA: ERS4666400
Organism
Candidatus Nomurabacteria bacterium
cellular organisms; Bacteria; Bacteria incertae sedis; Bacteria candidate phyla; Patescibacteria group; Parcubacteria group; Candidatus Nomurabacteria; unclassified Candidatus Nomurabacteria
Attributes
collection date2018-01-30/2021-01-30
broad-scale environmental contextlentic water body
local-scale environmental contextlake
environmental mediumwater
geographic locationSweden
investigation typemetagenome
isolation sourcelake water
project namemicrobes in stratified freshwaters
sample nameKiruna3_bin-4410
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2020-06-15T17:03:32Z
ENA-LAST-UPDATE2020-06-18T09:08:35Z
External IdSAMEA6956530
INSDC center nameBILS
INSDC first public2020-06-15T17:03:32Z
INSDC last update2020-06-18T09:08:35Z
INSDC statuspublic
Submitter IdKiruna3_bin-4410
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremegahit
binning parametersmin_len:1500,min_bin_size:10000,maxP:93,minS:50
binning softwaremetabat
collection datametagenome
completeness score70.94
completeness softwarecheckm
contamination score1.12
geographic location (latitude)67.65141666666668
geographic location (longitude)21.16713888888889
gtdb_taxonomyd__Bacteria;p__Patescibacteria;c__Paceibacteria;o__UBA9983_A;f__UBA9973;g__MFUC01
metagenomic OTUanoxic_mOTU_0647
metagenomic sourcelake water metagenome
regionKiruna
sample derived fromERS4649296
sample ownerGaetan Martin
scientific_nameCandidatus Nomurabacteria bacterium
sequencing methodNovaSeq
site nameHaukijärvi
taxonomic identity markergtdbtk followed by sourmash-lca, see publication
water environmental packagewater
BioProject
PRJEB38681
Retrieve all samples from this project

Submission
EBI; 2020-06-16
Accession:
SAMEA6956530
ID:
15267501

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