MAG Erken-D11_bin-1460 from assembly ERS4600392

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Links from Nucleotide

Identifiers: BioSample: SAMEA6947517; SRA: ERS4657399

Organism: uncultured Acidimicrobium sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidimicrobium; environmental samples

Attributes

collection date	2018-08-10
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Sweden
investigation type	metagenome
isolation source	lake water
nitrogen	53.9741695045942
organic carbon	1032.41276528429
oxygen	0.01
project name	microbes in stratified freshwaters
sample name	Erken-D11_bin-1460
temperature	14.6
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T04:03:53Z
ENA-LAST-UPDATE	2020-06-18T09:03:51Z
External Id	SAMEA6947517
INSDC center name	BILS
INSDC first public	2020-06-15T04:03:53Z
INSDC last update	2020-06-18T09:03:51Z
INSDC status	public
Submitter Id	Erken-D11_bin-1460
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	57.7
completeness software	checkm
contamination score	4.8
geographic location (depth)	20
geographic location (latitude)	59.83638888888889
geographic location (longitude)	18.641944444444444
gtdb_taxonomy	d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Microtrichales;f__Ilumatobacteraceae;g__BACL27
metagenomic OTU	anoxic_mOTU_2820
metagenomic source	lake water metagenome
region	Uppsala
sample derived from	ERS4600392
sample owner	Moritz Buck
scientific_name	uncultured Acidimicrobium sp.
sequencing method	NovaSeq
site name	Erken
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water