MAG AlinenSediments_bin-4582 from assembly ERS4649... - BioSample

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Result Filters

Organism: uncultured Chloroflexota bacterium
cellular organisms; Bacteria; Bacillati; Chloroflexota; environmental samples

Attributes

collection date	2018-08-22
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	sediment
geographic location	Finland
investigation type	metagenome
isolation source	freshwater sediment
project name	microbes in stratified freshwaters
sample name	AlinenSediments_bin-4582
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T17:03:32Z
ENA-LAST-UPDATE	2020-06-18T09:08:37Z
External Id	SAMEA6956635
INSDC center name	BILS
INSDC first public	2020-06-15T17:03:32Z
INSDC last update	2020-06-18T09:08:37Z
INSDC status	public
Submitter Id	AlinenSediments_bin-4582
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	46.48
completeness software	checkm
contamination score	3.37
geographic location (latitude)	61.20805555555556
geographic location (longitude)	25.11388888888889
gtdb_taxonomy	d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__Dehalococcoidales
metagenomic OTU	anoxic_mOTU_1016
metagenomic source	freshwater sediment metagenome
region	Evo
sample derived from	ERS4649272
sample owner	Sari Peura
scientific_name	uncultured Chloroflexi bacterium
sequencing method	NovaSeq
site name	Alinen Mustajärvi
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water