MAG Ki3-D2_bin-1262 from assembly ERS4600426

Identifiers: BioSample: SAMEA6944788; SRA: ERS4654673

Organism: uncultured Flavobacteriia bacterium
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; environmental samples

Attributes

ammonium	0.83153168135706
collection date	2019-07-30
dissolved carbon dioxide	732.7127418
dissolved organic carbon	681.891979651477
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Sweden
investigation type	metagenome
isolation source	lake water
methane	0.557954382
nitrate	1.04830424692242
oxygen	0.1
pH	6.61
phosphate	0.042117942875434
project name	microbes in stratified freshwaters
sample name	Ki3-D2_bin-1262
sulfate	2.797
temperature	7.9
total dissolved nitrogen	500
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T04:03:54Z
ENA-LAST-UPDATE	2020-06-18T09:04:09Z
External Id	SAMEA6944788
INSDC center name	BILS
INSDC first public	2020-06-15T04:03:54Z
INSDC last update	2020-06-18T09:04:09Z
INSDC status	public
Submitter Id	Ki3-D2_bin-1262
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	98.38
completeness software	checkm
contamination score	0.81
ferric iron	32.50494999
ferrous iron	12.78151114
geographic location (depth)	2.5
geographic location (latitude)	67.65141666666668
geographic location (longitude)	21.16713888888889
gtdb_taxonomy	d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae
iron	45.28646113
metagenomic OTU	anoxic_mOTU_1934
metagenomic source	lake water metagenome
region	Kiruna
sample derived from	ERS4600426
sample owner	Gaetan Martin
scientific_name	uncultured Flavobacteriia bacterium
sequencing method	NovaSeq
site name	Haukijärvi
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water

BioProject: PRJEB38681
Retrieve all samples from this project

Submission: EBI; 2020-06-16

Accession:: SAMEA6944788
ID:: 15252606

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MAG Ki3-D2_bin-1262 from assembly ERS4600426

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