Chicken_24_mag_167

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Result Filters

Organism: uncultured Bifidobacterium sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples

Attributes

collection date	not collected
broad-scale environmental context	Gallus gallus domesticus
local-scale environmental context	Caeca
environmental medium	Gut contents
geographic location	United Kingdom
investigation type	metagenome
isolation source	metagenome
project name	PRJEB33338
sample name	Chicken_24_mag_167
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-09-08T17:06:11Z
ENA-LAST-UPDATE	2020-08-21T15:33:40Z
External Id	SAMEA7202393
INSDC center name	THE ROSLIN INSTITUTE
INSDC first public	2020-09-08T17:06:11Z
INSDC last update	2020-08-21T15:33:40Z
INSDC status	public
Submitter Id	Chicken_24_mag_167
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Metabat2
binning parameters	-v -m 2000
binning software	Metabat2
common name	uncultured Bifidobacterium sp.
completeness score	81.16
completeness software	CheckM
contamination score	0.27
geographic location (latitude)	55.86513
geographic location (longitude)	-3.197356
metagenomic source	Gallus gallus
sample derived from	ERS3558299
scientific_name	uncultured Bifidobacterium sp.
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	CheckM_markers