Pathogen: clinical or host-associated sample from ... - BioSample

Pathogen: clinical or host-associated sample from Serratia rubidaea

Organism: Serratia rubidaea
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Serratia

Attributes

Interagency Food Safety Analytics Collaboration (IFSAC) category	clinical/research, human
source type	human
collected by	Aga Khan University, Karachi
collection date	1998
geographic location	Pakistan
isolate name alias	BT-3288
latitude and longitude	missing
strain	CFSAN059619
isolation source	throat
host disease	missing
host	Homo sapiens
project name	GenomeTrakr
sequenced by	FDA Center for Food Safety and Applied Nutrition
attribute_package	clinical/host-associated
ontological term	throat:UBERON_0000341
PublicAccession	CFSAN059619
ProjectAccession	PRJNA342326
Species	rubidaea
Genus	Serratia

BioProject: PRJNA342326 Citrobacter freundii, Shigella sp., Salmonella enterica, Enterobacter cloacae, Citrobacter sp., and Escherichia coli
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Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Testing standard
imipenem	susceptible	<	0.5	mg/L	MIC	CLSI
ertapenem	susceptible	<	0.125	mg/L	MIC	CLSI
doripenem	susceptible	<	0.125	mg/L	MIC	CLSI
meropenem	susceptible	<	0.125	mg/L	MIC	CLSI
cefepime	susceptible	<	0.5	mg/L	MIC	CLSI
ciprofloxacin	susceptible	<	0.25	mg/L	MIC	CLSI
ceftriaxone	susceptible	<	1	mg/L	MIC	CLSI
aztreonam	susceptible	<	2	mg/L	MIC	CLSI
trimethoprim-sulfamethoxazole	susceptible	<	0.5/9.5	mg/L	MIC	CLSI
polymyxin B	resistant	>	8	mg/L	MIC	CLSI
colistin	resistant	>	8	mg/L	MIC	EUCAST
tetracycline	intermediate	==	8	mg/L	MIC	CLSI
cefazolin	resistant	>	8	mg/L	MIC	CLSI
tigecycline	susceptible	==	1	mg/L	MIC	EUCAST
cefotaxime	susceptible	<	0.5	mg/L	MIC	CLSI
ceftazidime	susceptible	<	1	mg/L	MIC	CLSI
amikacin	susceptible	<	1	mg/L	MIC	CLSI
gentamicin	susceptible	==	0.5	mg/L	MIC	CLSI
levofloxacin	susceptible	==	0.25	mg/L	MIC	CLSI
tobramycin	susceptible	==	1	mg/L	MIC	CLSI
piperacillin-tazobactam	susceptible	<	4/4	mg/L	MIC	CLSI
ampicillin	susceptible	==	8	mg/L	MIC	CLSI
ampicillin-sulbactam	susceptible	==	8/4	mg/L	MIC	CLSI
chloramphenicol	intermediate	==	16	mg/L	MIC	CLSI
cefoxitin	susceptible	==	8	mg/L	MIC	CLSI
minocycline	susceptible	<	4	mg/L	MIC	CLSI