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metagenome-assembled genome

Identifiers
BioSample: SAMEA8395273; SRA: ERS6080756
Organism
Campylobacter rectus
cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter
Attributes
collection datenot provided
broad-scale environmental contexthuman-associated habitat
local-scale environmental contexthuman oral cavity
environmental mediumnot provided
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourcenot provided
project nameHuman Oral MAGs
sample nameSRR9217473-mag-bin.5
ENA first public2021-03-23
ENA last update2021-03-22
ENA-CHECKLISTERC000047
External IdSAMEA8395273
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2021-03-23T08:57:14Z
INSDC last update2021-03-22T20:42:55Z
INSDC statuspublic
Submitter IdSRR9217473-mag-bin.5
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades_v3.14.1
binning parametersdefault
binning softwareMetaWRAP v1.1
broker nameEMG broker account, EMBL-EBI
completeness score91.07
completeness softwareCheckM v1.1.3
contamination score0.43
geographic location (latitude)not provided
geographic location (longitude)not provided
metagenomic sourcehuman oral metagenome
sample derived fromSRS4893103
sequencing methodIllumina
taxonomic identity markermulti-marker approach
Description

This sample represents a metagenome-assembled genome from the metagenomic run SRR9217473

BioProject
PRJEB43277
Retrieve all samples from this project

Submission
EBI; 2021-03-24
Accession:
SAMEA8395273
ID:
18469290

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