MGBC129157

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Result Filters

Organism: Sangeribacter muris
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Muribaculaceae; Sangeribacter

Attributes

broad-scale environmental context	mouse gut
collection date	not provided
environmental medium	Caecum
geographic location	South Korea
investigation type	metagenome-assembled genome
isolation source	Caecum
project name	Metagenome-assembled genomes from the Mouse Gastrointestinal Bacteria Catalogue
sample name	MGBC129157
ENA first public	2021-06-18
ENA-CHECKLIST	ERC000047
ENA-LAST-UPDATE	2023-04-12
External Id	SAMEA8805469
INSDC center alias	UNIVERSITY OF CAMBRIDGE
INSDC center name	UNIVERSITY OF CAMBRIDGE
INSDC first public	2021-06-18T00:19:13Z
INSDC last update	2023-04-12T16:25:06Z
INSDC status	public
Submitter Id	MGBC129157
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes;3.10.1;default
binning parameters	default parameters, kmer: 4
binning software	metaWRAP (MetaBAT2, MaxBin2 and CONCOCT)
completeness score	96.86
completeness software	CheckM
contamination score	0.00
geographic location (latitude)	37.30973
geographic location (longitude)	126.85361
local environmental context	mouse-associated habitat
metagenomic source	mouse gut metagenome
sample derived from	ERS3646632
scientific_name	Sangeribacter muris
sequencing method	Illumina
taxonomic identity marker	multi-marker approach