Methylococcaceae MAG from Amsterdam canal biofilm

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Result Filters

Organism: biofilm metagenome
unclassified entries; unclassified sequences; metagenomes; ecological metagenomes

Attributes

collection date	2019-07-02
broad-scale environmental context	urban waterway
local-scale environmental context	city centre canal
environmental medium	biofilm
geographic location	Netherlands
investigation type	metagenome-assembled genome
isolation source	Canal wall biofilm
project name	PRJEB40426
sample name	Amsterdam_MAG
ENA first public	2021-07-08
ENA last update	2021-07-08
ENA-CHECKLIST	ERC000047
External Id	SAMEA8962004
INSDC center alias	RADBOUD UNIVERSITY, Department Microbiology
INSDC center name	RADBOUD UNIVERSITY, Department Microbiology
INSDC first public	2021-07-08T16:18:01Z
INSDC last update	2021-07-08T16:18:01Z
INSDC status	public
Submitter Id	Amsterdam_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT;1.2.9;kmer set 21,29,39,59,79,99,119;default
binning parameters	default parameters
binning software	maxbin, metabat, concoct, binsanity and das_tool
completeness score	84
completeness software	checkm
contamination score	6.6
geographic location (latitude)	52.37
geographic location (longitude)	4.89
metagenomic source	biofilm metagenome
sample derived from	ERS6638746-ERS6638750
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	UBCG2 marker gene set

Description: Metagenome-assembled genome of a Methylococcaceae bacterium classified as a Methyloglobulus sp. by UBCG2. Recovered from a co-assembly of 5 environmental biofilms.