Metagenome-assembled genome: DRR214959_bin.31_meta... - BioSample

Metagenome-assembled genome: DRR214959_bin.31_metaWRAP_v1.1_MAG

Identifiers: BioSample: SAMEA10110161; SRA: ERS7766719

Organism: uncultured Pasteurellaceae bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	Human oral metagenome
local-scale environmental context	Human oral cavity
environmental medium	Saliva
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	human saliva metagenome
project name	>30Gb sequence data per sample were generated for joint analysis of > 30Gb long read sequence data of PromethION (JGAS00000000186 in JGA database) The Data Access Committee of the National Bioscience Database Center (NBDC) approved that this personal genetic data were made published according to NBDC data sharing guidelines (http://humandbs.biosciencedbc.jp/).
sample name	DRR214959_bin.31_metaWRAP_v1.1_MAG
ENA first public	2021-09-16
ENA last update	2021-09-16
ENA-CHECKLIST	ERC000047
External Id	SAMEA10110161
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2021-09-16T13:31:55Z
INSDC last update	2021-09-16T13:31:55Z
INSDC status	public
Submitter Id	DRR214959_bin.31_metaWRAP_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Flye Assembler v. 2.4.2
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metaWRAP v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	50.74
completeness software	CheckM
contamination score	2.92
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	human saliva metagenome
sample derived from	SAMD00202454
sequencing method	HiSeq X Ten
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run DRR214959 of study DRP005925.

BioProject: PRJDB9452 human saliva metagenome
Retrieve all samples from this project

Submission: EBI; 2021-09-25

Accession:: SAMEA10110161
ID:: 21644822

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Metagenome-assembled genome: DRR214959_bin.31_metaWRAP_v1.1_MAG

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