CDC Sars CoV2 Sequencing Baseline Constellation

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Result Filters

Identifiers: BioSample: SAMN22350587; SRA: SRS10602158; CDC-OAMD: SARS-CoV-2/Human/USA/ID-CDC-LC0317157/2021

Organism: Severe acute respiratory syndrome coronavirus 2
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus; Severe acute respiratory syndrome-related coronavirus

Attributes

isolate	SARS-CoV-2/Human/USA/ID-CDC-LC0317157/2021
collected by	Laboratory Corporation of America
collection date	2021-10-02
isolation source	Nasal Swabs
geographic location	USA: Idaho
host	Homo sapiens
host disease	COVID-19
host sex	male
host age	37
collection device	Nasal Swabs
collection method	Nasal Swabs
purpose of sequencing	baseline surveillance (random sampling)
host_race	Unknown
diagnostic_gene_name_1	N1 gene
diagnostic_pcr_protocol_1	Labcorp LDT
diagnostic_pcr_Ct_value_1	22.181
diagnostic_gene_name_2	N2 gene
diagnostic_pcr_protocol_2	Labcorp LDT
diagnostic_pcr_Ct_value_2	21.057
diagnostic_gene_name_3	RP gene
diagnostic_pcr_protocol_3	Labcorp LDT
diagnostic_pcr_Ct_value_3	32.158
lineage/clade name	AY.25