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Pathogen: environmental/food/other sample from Escherichia coli

Identifiers: BioSample: SAMN25221515; Sample name: ECOL-21-VL-LA-TX-0031; SRA: SRS11752067

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Package: Pathogen: environmental/food/other; version 1.0

Attributes

strain	ECOL-21-VL-LA-TX-0031
collected by	Texas A&M University Veterinary Medical Teaching Hospital Clinical Microbiology Laboratory
collection date	2021-08
geographic location	USA:TX
isolation source	urine
latitude and longitude	Not collected
serotype	O9:H28
source type	animal
sequenced by	Louisiana Animal Disease Diagnostic Laboratory - Louisiana State University
host	Canis lupus familiaris
intended consumer	not applicable
project name	Vet-LIRN
purpose of sampling	Monitoring

BioProject: PRJNA324573 Escherichia coli
Retrieve all samples from this project

Submission: Louisiana Animal Disease Diagnostics Laboratory, Laura Peak; 2022-01-24

Antibiogram
Antibiotic	Resistance phenotype	Measurement sign	Measurement	Measurement units	Laboratory typing method	Laboratory typing platform	Vendor	Laboratory typing method version or reagent	Testing standard
gentamicin	not defined	==	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
imipenem	not defined	<=	1	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
pradofloxacin	not defined	>	2	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
amikacin	not defined	<=	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
ceftazidime	not defined	<=	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
enrofloxacin	not defined	>	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
marbofloxacin	not defined	>	4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
trimethoprim-sulfamethoxazole	not defined	>	4/76	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
amoxicillin-clavulanic acid	not defined	>	8/4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
ampicillin	not defined	>	8	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cefovecin	not defined	>	8	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cefpodoxime	not defined	>	8	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
doxycycline	not defined	>	8	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
orbifloxacin	not defined	>	8	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
piperacillin-tazobactam	not defined	<=	8/4	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cephalexin	not defined	>	16	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
tetracycline	not defined	>	16	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
cefazolin	not defined	>	32	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI
chloramphenicol	not defined	==	32	mg/L	MIC	Sensititre	Trek	96-Well Plate	CLSI

Accession:: SAMN25221515
ID:: 25221515

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Pathogen: environmental/food/other sample from Escherichia coli
Pathogen: environmental/food/other sample from Escherichia coli

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